Adds the ability to index folder and re-populate the db

Misc:
The arguments are now sorted alphabetically in the main funciton

close #4

inc/file-management

@@ -44,8 +44,6 @@ updateFileChange(){
 	[ ! -e "$filename" ] && die "No such file $1"
 	title="$(getYamlTitle "$filename")"
 	newFilename="$(escapeFilename "$title.md")"
-	echo "Filename: '$filename'
-new filename: '$newFilename'"
 	if [ "$filename" = "$newFilename" ]; then
 		# The title hasn't changed
 		# check if the file is in the DB

inc/init

@@ -20,6 +20,10 @@ initKnowledgeBase(){
 		git -C "$dataDir" add .gitignore > "$output"
 		git -C "$dataDir" commit -m "Knowledge base initialised" > output
 	fi
+	initDB
+}
+
+initDB(){
 	vecho "Creating Database"
 	echo 'CREATE TABLE items
 	(id integer primary key, filename text, title text, type text);
@@ -30,4 +34,3 @@ initKnowledgeBase(){
 	sqlite3 "${sqliteFile}"
 	necho -e "${GREEN}Initialised Knowledge base${NC}"
 }
-

kb

@@ -243,6 +243,21 @@ listEntries(){
 		sqlite3 --column $header "${sqliteFile}"
 }
 
+
+indexFolder(){
+	vecho "indexFolder $*"
+	local olddogit="$dogit"
+	dogit=0
+	initDB
+	find "$dataDir" -name "*.md" | while read file; do
+		file="${file##*/}"
+		updateFileChange "$file"
+	done
+	dogit="$olddogit"
+
+}
+
+
 mainScript() {
 	############## Begin Script Here ###################
 	####################################################
@@ -255,18 +270,20 @@ mainScript() {
 		fi
 	fi
 	case "${args[0]}" in
-		init) initKnowledgeBase; safeExit ;;
-		makedb) makedb; safeExit ;;
-		new) newFile "${args[@]:1}"; safeExit ;;
-		edit) editFile "${args[@]:1}"; safeExit ;;
-		list) listEntries "${args[@]:1}"; safeExit ;;
-		list-tags) listTags "${args[@]:1}"; safeExit ;; 
-		view) viewFile "${args[@]:1}"; safeExit ;;
-		fuzzy) fuzzySelect "${args[@]:1}"; safeExit ;;
-		update) updateFileChange "${args[@]:1}"; safeExit ;;
 		deepsearch) deepSearch "${args[@]:1}"; safeExit ;;
 		del|delete) deleteFile "${args[@]:1}"; safeExit ;;
+		edit) editFile "${args[@]:1}"; safeExit ;;
+		fuzzy) fuzzySelect "${args[@]:1}"; safeExit ;;
 		git) externalgit "${args[@]:1}"; safeExit ;;
+		index) indexFolder "${args[@]:1}"; safeExit ;;
+		init) initKnowledgeBase; safeExit ;;
+		list) listEntries "${args[@]:1}"; safeExit ;;
+		list-tags) listTags "${args[@]:1}"; safeExit ;; 
+		makedb) makedb; safeExit ;;
+		new) newFile "${args[@]:1}"; safeExit ;;
+		update) updateFileChange "${args[@]:1}"; safeExit ;;
+		view) viewFile "${args[@]:1}"; safeExit ;;
+
 		*) usage >&2; safeExit ;;
 	esac
 
@@ -315,6 +332,7 @@ usage() {
 		edit or view
 	git [options]           Run arbitary git commands on the kb repository
 	del [title]             Delete a file
+	index                   Indexes the folder (usful after a clone etc)
 "
 }