Adds the ability to index folder and re-populate the db

Misc:
The arguments are now sorted alphabetically in the main funciton

close #4

inc/file-management

@@ -44,8 +44,6 @@ updateFileChange(){
 	[ ! -e "$filename" ] && die "No such file $1"
 	title="$(getYamlTitle "$filename")"
 	newFilename="$(escapeFilename "$title.md")"
-	echo "Filename: '$filename'
-new filename: '$newFilename'"
 	if [ "$filename" = "$newFilename" ]; then
 		# The title hasn't changed
 		# check if the file is in the DB

inc/init

@@ -20,6 +20,10 @@ initKnowledgeBase(){
 		git -C "$dataDir" add .gitignore > "$output"
 		git -C "$dataDir" commit -m "Knowledge base initialised" > output
 	fi
+	initDB
+}
+
+initDB(){
 	vecho "Creating Database"
 	echo 'CREATE TABLE items
 	(id integer primary key, filename text, title text, type text);
@@ -30,4 +34,3 @@ initKnowledgeBase(){
 	sqlite3 "${sqliteFile}"
 	necho -e "${GREEN}Initialised Knowledge base${NC}"
 }
-